Difference between revisions of "Micronucl"

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A protocol for the cheek cell micronuclei tests follows:
 
A protocol for the cheek cell micronuclei tests follows:
  
 +
(as all molecular microbiologists are aware, each researcher will have their particular ways to do the same things...
 +
our take on it all is that many methods may work well indeed and should be shared more!)
  
 +
'''A basic DIT-research protocol to look for micronuclei in your own cheek cells'''
  
the basic DIT-research protocol to look for micronuclei in your own cheek cells
+
''Note:  To ideally work in pairs, at least, and score one another's cells after preparation.
 +
This helps avoid problems of human reporting bias, it is believed.''
  
To ideally work in pairs, at least, and score one another's cells after preparation.
+
'''Protocol:'''
This helps avoid problems of human reporting bias, it is believed.
+
*rinse mouth well with water
 +
*use toothbrush to gently collect cells
 +
*wash off toothbrush into little beaker with about 10ml of saline solution
 +
*pour into 15ml conical to allow largest clumps to settle away and
 +
*pellet cells from best part of liquid into two microcentrifuge tubes
 +
*spin gently (no more than 5k rpm ) for 3min
 +
*pour off supernatants, and repeat until all cells are collected
 +
*pool pellets from the two tubes into one tube, in about 200ul saline solution
 +
*get cell concentration of this solution, want to aim for 2000-5000 cells per slide
 +
*use 10ul to count on hemocytometer (the calculation if you count several cells (X) of the size of the main square = (X*#cells/X) per main square x10^4/ml)
 +
I*f necessary spin again to concentrate cells again in a small volume, as, ideally, for 'smears' will put drops of less than 50-100ul, containing about 2000 cells, onto each slide.
  
Protocol:
+
*Make sure slides are clean and labelled before proceeding to smears.
rinse mouth well with water
+
*''(To demonstrate during workshops, of course.)''
use toothbrush to gently collect cells
+
*place drop about 3/4 to end of slide, then with the edge of a second clean slide move the drop back (need pics too...)
wash off toothbrush into little beaker with about 10ml of saline solution
+
<br>
pour into 15ml conical to allow largest clumps to settle away and
+
*Let each slide air dry, can place on a hot plate.
pellet cells from best part of liquid into two microcentrifuge tubes
+
*Fix cells to slide by briefly passing over a flame (remove soot from bottom before going onto staining).<br>
spin gently (no more than 5k rpm ) for 3min
+
''(optional fix with methanol:acetic acid 3:1)''
pour off supernatants, and repeat until all cells are collected
+
Stain cells with Methylene Blue (0.5% aqueous, unless optional fix – then can be made up in ethanol...) <br> If have slide dipping containers, coplin jars, so much the better, but can also just put a drop on the slide.  <br> Leave stain on at least 1min then rinse with drops of water, collecting blue waste liquid* in a beaker.  Let sample dry and examine under a microscope at about a 200x magnification.
pool pellets from the two tubes into one tube, in about 200ul saline solution
 
get cell concentration of this solution, want to aim for 2000-5000 cells per slide
 
use 10ul to count on hemocytometer (the calculation if you count several cells (X) of the size of the main square = (X*#cells/X) per main square x10^4/ml)
 
If necessary spin again to concentrate cells again in a small volume, as, ideally, for 'smears' will put drops of less than 50-100ul, containing about 2000 cells, onto each slide.
 
 
 
Make sure slides are clean and labelled before proceeding to smears.
 
(To demonstrate during workshops, of course.)  
 
place drop about 3/4 to end of slide, then with the edge of a second clean slide move the drop back (need pics too...)
 
 
 
Let each slide air dry, can place on a hot plate.
 
Fix cells to slide by briefly passing over a flame (remove soot from bottom before going onto staining).
 
(optional fix with methanol:acetic acid 3:1)
 
Stain cells with Methylene Blue (0.5% aqueous, unless optional fix – then can be made up in ethanol...) If have slide dipping containers, so much the better, but can also just put a drop on the slide.  Leave stain on at least 1min then rinse with drops of water, collecting blue waste liquid* in a beaker.  Let sample dry and examine under a microscope at about a 200x magnification.
 
  
 
Quantitation is crucial – micronuclei can arise from normal processes, but an increase of 2-4/1000 to 20 or more per 1000 cheek cells could mean one should consider deleterious environmental exposures ...
 
Quantitation is crucial – micronuclei can arise from normal processes, but an increase of 2-4/1000 to 20 or more per 1000 cheek cells could mean one should consider deleterious environmental exposures ...
  
  
Figure 1 shows one example cheek cell containing a micronucleus, smeared fixed and stained simply with methylene blue as above.
+
Figure 1 shows one example cheek cell containing a micronucleus, smeared fixed and stained simply with methylene blue, as above.
 
[[File:Micronucl1pl1.jpg |200px|]]
 
[[File:Micronucl1pl1.jpg |200px|]]

Revision as of 16:50, 14 October 2017

A protocol for the cheek cell micronuclei tests follows:

(as all molecular microbiologists are aware, each researcher will have their particular ways to do the same things... our take on it all is that many methods may work well indeed and should be shared more!)

A basic DIT-research protocol to look for micronuclei in your own cheek cells

Note: To ideally work in pairs, at least, and score one another's cells after preparation. This helps avoid problems of human reporting bias, it is believed.

Protocol:

  • rinse mouth well with water
  • use toothbrush to gently collect cells
  • wash off toothbrush into little beaker with about 10ml of saline solution
  • pour into 15ml conical to allow largest clumps to settle away and
  • pellet cells from best part of liquid into two microcentrifuge tubes
  • spin gently (no more than 5k rpm ) for 3min
  • pour off supernatants, and repeat until all cells are collected
  • pool pellets from the two tubes into one tube, in about 200ul saline solution
  • get cell concentration of this solution, want to aim for 2000-5000 cells per slide
  • use 10ul to count on hemocytometer (the calculation if you count several cells (X) of the size of the main square = (X*#cells/X) per main square x10^4/ml)

I*f necessary spin again to concentrate cells again in a small volume, as, ideally, for 'smears' will put drops of less than 50-100ul, containing about 2000 cells, onto each slide.

  • Make sure slides are clean and labelled before proceeding to smears.
  • (To demonstrate during workshops, of course.)
  • place drop about 3/4 to end of slide, then with the edge of a second clean slide move the drop back (need pics too...)


  • Let each slide air dry, can place on a hot plate.
  • Fix cells to slide by briefly passing over a flame (remove soot from bottom before going onto staining).

(optional fix with methanol:acetic acid 3:1) Stain cells with Methylene Blue (0.5% aqueous, unless optional fix – then can be made up in ethanol...)
If have slide dipping containers, coplin jars, so much the better, but can also just put a drop on the slide.
Leave stain on at least 1min then rinse with drops of water, collecting blue waste liquid* in a beaker. Let sample dry and examine under a microscope at about a 200x magnification.

Quantitation is crucial – micronuclei can arise from normal processes, but an increase of 2-4/1000 to 20 or more per 1000 cheek cells could mean one should consider deleterious environmental exposures ...


Figure 1 shows one example cheek cell containing a micronucleus, smeared fixed and stained simply with methylene blue, as above. Micronucl1pl1.jpg