Gathering Data

Introduction

Gathering data, on a biochemical standpoint, can prove to be at first a daunting task for an inexperienced user. Databases containing information such as chemical structures, gene sequences and protein structures have flourished in the past years. Several of those databases support and provide APIs for remotely, through scripts, access and gather the data. Furthermore, scientists developed libraries allowing one to access the servers with greater ease thanks to some available functions. Here we aim to document several of our favorites databases supporting Python scripting and to present the libraries we use. We will try to implement some of the already existing libraries with scripts facilitating the database access allowing programmers to quickly get access to scripts. We do not pretend to be the first ones listing databases and will try to punctuate the document with existing articles to expand the reader's knowledge.

Chemistry

Here we will describe the databases that we found to be the most complete and where the data access is the most straightforward.

From previous authors

• Sixty-Four Free Chemistry Databases:The name says it all. This page describes most of the known chemical databases.