Difference between revisions of "Biolab"
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| − | [[File:Hackuarium_logo15.png| | + | [[File:Hackuarium_logo15.png|100px|thumb]] |
| − | '''Welcome to the page with information about the Hackuarium Biolab Space in Ecublens!''' | + | |
| − | Hackuarium has two rooms in the context of the new cooperative, the Biolab with windows, and the so-called 'inner sanctum' without windows. | + | '''Welcome to the page with information about the Hackuarium Biolab Space in Ecublens!''' <br> |
| + | Hackuarium has two rooms in the context of the new cooperative, the Biolab with windows, and the so-called 'inner sanctum' without windows. | ||
The latter can be used for some biology work, especially higher resolution microscopy (with Raspberry Pi camera on the old Zeiss scope) and bioluminescence studies, but no growth of cultures is allowed there. | The latter can be used for some biology work, especially higher resolution microscopy (with Raspberry Pi camera on the old Zeiss scope) and bioluminescence studies, but no growth of cultures is allowed there. | ||
(there is a carpet!) | (there is a carpet!) | ||
| − | The overall map of | + | The overall map of our coop space is shown on the right, and below that is an updated P1 lab map. [[File:Crochy20Ecublens - spaceallocsmaller15may19.png|400px|thumb|right| map of the space]] [[File:P1lab map png.png|thumb|The P1 lab has controlled access for potential work on GMOs. Plan your experiments in advance!]]<br> |
The biolab is located in a south facing room of over 22m2, with three windows and a linoleum floor. <br> | The biolab is located in a south facing room of over 22m2, with three windows and a linoleum floor. <br> | ||
| − | It must be stressed that this is a provisional space, with the building already destined for destruction in the next 3-5 years (or so they say!). | + | ''It must be stressed that this is a provisional space, with the building already destined for destruction in the next 3-5 years (or so they say!). <br> Thus, we still need to find someplace more sustainable, and any help in this regard would be greatly appreciated!'' <br> |
=Inspiration= | =Inspiration= | ||
Getting the Hackuarium community together for some real biological experimentation is an evolving endeavor. | Getting the Hackuarium community together for some real biological experimentation is an evolving endeavor. | ||
| − | In Renens the official 'P1 laboratory' ran for only about a year, and more information on that can be found in various parts of this wiki | + | In Renens the official 'P1 laboratory' ran for only about a year, and more information on that can be found in various parts of this wiki. [http://wiki.hackuarium.ch/w/P1_Lab_Activities Starting from here for historical perspective] is a good option. <br> |
=Biosafety Officers= | =Biosafety Officers= | ||
| − | Rachel Aronoff and Olivier Emery | + | Rachel Aronoff and Olivier Emery continued their roles as biosafety officers in the new space, until Olivier got too busy and left the board in June 2020, after which Javier Ortiz became the deputy. Maybe '''you''' would like to become a second deputy biosafety officier? :) <br> |
If you need to contact them in particular about any proposed activities or projects in the biolab, please use this email address: biolab@hackuarium.ch <br> | If you need to contact them in particular about any proposed activities or projects in the biolab, please use this email address: biolab@hackuarium.ch <br> | ||
| Line 23: | Line 24: | ||
Here is the [https://drive.google.com/open?id=0B1jaPHOkH_42dVhjOXBBN0xsUms link to all the Biosafety info, list of users and list of strains to date] for future reference. <br> | Here is the [https://drive.google.com/open?id=0B1jaPHOkH_42dVhjOXBBN0xsUms link to all the Biosafety info, list of users and list of strains to date] for future reference. <br> | ||
| − | We have to note that at least some strains did not survive the moving process, even though dry ice was used to move tubes from one -20 to another... :( <br> | + | After RA's first Biosummit in 2020, [https://docs.google.com/document/d/1Qkc2uCAcLX45b0GjSGZohweelJ-vDOhX5MDSf6F4MEI/edit?usp=sharing this great resource for community biolabs] came to her attention, for everyone's use. <br> |
| − | However, we had a surprise in being able to revive some bioluminescent bacteria (which turned out to be Photobacterium phosphorum!) after many months in an eppendorf tube in the frig!! | + | We have to note that at least some lab strains did not survive the moving process, even though dry ice was used to move tubes from one -20 to another... :( <br> |
| + | However, we had a nice surprise, already, in being able to revive some bioluminescent bacteria (which turned out to be ''Photobacterium phosphorum''!) after many months in an eppendorf tube in the frig!! More [http://wiki.hackuarium.ch/w/Bioluminescence_investigations information about this is already] in the wiki. | ||
=Timeline for Project Initiation= | =Timeline for Project Initiation= | ||
1) Talk with everyone about your ideas and what you would like to do. Public presentations during Wednesday #OpenHackuarium events are recommended!<br> | 1) Talk with everyone about your ideas and what you would like to do. Public presentations during Wednesday #OpenHackuarium events are recommended!<br> | ||
| − | 2) Take the | + | 2) Take the 'intro to biosafety course' and do risk assessment on your idea. <br> |
| + | 12 people have already taken the "Introduction to biosafety" training for the new space. <br> '''More training sessions can be organised upon request.''' <br> | ||
3) Start documenting your idea in the wiki. You can use [http://wiki.hackuarium.ch/w/Hypo_proj this template] developed by YannP as a guide. <br> | 3) Start documenting your idea in the wiki. You can use [http://wiki.hackuarium.ch/w/Hypo_proj this template] developed by YannP as a guide. <br> | ||
4) If we really get the ok to do P1 experiments, go ahead and fill in [http://wiki.hackuarium.ch/w/Form:GMO_Project the form], also developed by YannP! <br> | 4) If we really get the ok to do P1 experiments, go ahead and fill in [http://wiki.hackuarium.ch/w/Form:GMO_Project the form], also developed by YannP! <br> | ||
| − | 5) Get going! (ask for a minigrant, if necessary for obtaining reagents or other materials.) <br> | + | 5) Get a project box, and get going! (ask for a minigrant, if necessary for obtaining reagents or other materials.) <br> |
<br> | <br> | ||
= Further information = | = Further information = | ||
| − | + | * The lab layout is modular and flexible, with the tall bench useful in both orientations, depending on needs. | |
| − | * Do you have questions? Maybe you can't reach Rachel or | + | * Much equipment can be kept on shelves, and taken out to use when needed. |
| − | + | * All projects will have a box for their special equipment and stocks. Ask for a new one, if you need it! | |
| − | + | * Always tidy things away after manipulations are complete, and if anything needs to stay out on a bench, or in incubators, remember to always '''leave signed and dated notes'''! | |
| − | * The | + | * Do you have questions? <br>Maybe you can't reach Rachel or Javier, or want to find out more before even trying to ask them?? <br> There is a service in the DIYBio community for this [http://ask.diybio.org/ Ask a Biosafety Professional]! Use it! (actually in the midst of a double check to see if it still works -nov23)<br> |
| + | * '''Remember, being clueless is no excuse!! there are many ways to find information.''' | ||
| + | * The Standard Operating Procedures for appropriate use of the new space are being developed, and build upon what was [http://wiki.hackuarium.ch/w/P1_SOP previously decided during preparations to establish a P1 laboratory for Hackuarium members] already back in 2015/6. ([http://wiki.hackuarium.ch/w/Instru_Main Some old equipment] still has useful QR codes that lead to information in this wiki, too! Bravo, les poulpes!) | ||
| + | Here are some [http://wiki.hackuarium.ch/w/New_SOPs new SOPs] for use of the small sterile hood and for use of the ultracentrifuge in the new space. | ||
| + | * Key code access will depend on responsibility and training of users of the space! | ||
| + | |||
| + | Watch this space for more information! <br> | ||
| − | + | Translation help welcome! :) | |
<br> | <br> | ||
| − | + | ||
=== Gallery === | === Gallery === | ||
<gallery mode=packed widths=300 heights=300> | <gallery mode=packed widths=300 heights=300> | ||
| − | + | File:Timelapseclip18may19.png | |
| + | File:Morebiolum.png | ||
| + | File:IMG 8618.JPG | ||
| + | File:DSC 8698.jpg | ||
| + | </gallery> | ||
<br> | <br> | ||
| + | * first image: a moment during a micronuclei workshop (18may19) | ||
| + | * second image: Bioluminescence of ''Photobacterium phosphorum'' 8s exposure with SLR camera | ||
| + | * third image: Bioluminescence of ''Photobacterium phosphorum'' quick pic in 'inner sanctum' with iPhone SE | ||
| + | * fourth image: Bioluminescence of some marine plankton, the Dinoflagellates ''Pyrocystis fusiformis'' | ||
| + | <br> | ||
| + | |||
| + | [[Category:Work In Progress]] | ||
Latest revision as of 16:46, 5 November 2023
Welcome to the page with information about the Hackuarium Biolab Space in Ecublens!
Hackuarium has two rooms in the context of the new cooperative, the Biolab with windows, and the so-called 'inner sanctum' without windows.
The latter can be used for some biology work, especially higher resolution microscopy (with Raspberry Pi camera on the old Zeiss scope) and bioluminescence studies, but no growth of cultures is allowed there.
(there is a carpet!)
The overall map of our coop space is shown on the right, and below that is an updated P1 lab map.
The biolab is located in a south facing room of over 22m2, with three windows and a linoleum floor.
It must be stressed that this is a provisional space, with the building already destined for destruction in the next 3-5 years (or so they say!).
Thus, we still need to find someplace more sustainable, and any help in this regard would be greatly appreciated!
Inspiration
Getting the Hackuarium community together for some real biological experimentation is an evolving endeavor.
In Renens the official 'P1 laboratory' ran for only about a year, and more information on that can be found in various parts of this wiki. Starting from here for historical perspective is a good option.
Biosafety Officers
Rachel Aronoff and Olivier Emery continued their roles as biosafety officers in the new space, until Olivier got too busy and left the board in June 2020, after which Javier Ortiz became the deputy. Maybe you would like to become a second deputy biosafety officier? :)
If you need to contact them in particular about any proposed activities or projects in the biolab, please use this email address: biolab@hackuarium.ch
Key Aims
To learn, have fun, and avoid problems!
Here is the link to all the Biosafety info, list of users and list of strains to date for future reference.
After RA's first Biosummit in 2020, this great resource for community biolabs came to her attention, for everyone's use.
We have to note that at least some lab strains did not survive the moving process, even though dry ice was used to move tubes from one -20 to another... :(
However, we had a nice surprise, already, in being able to revive some bioluminescent bacteria (which turned out to be Photobacterium phosphorum!) after many months in an eppendorf tube in the frig!! More information about this is already in the wiki.
Timeline for Project Initiation
1) Talk with everyone about your ideas and what you would like to do. Public presentations during Wednesday #OpenHackuarium events are recommended!
2) Take the 'intro to biosafety course' and do risk assessment on your idea.
12 people have already taken the "Introduction to biosafety" training for the new space.
More training sessions can be organised upon request.
3) Start documenting your idea in the wiki. You can use this template developed by YannP as a guide.
4) If we really get the ok to do P1 experiments, go ahead and fill in the form, also developed by YannP!
5) Get a project box, and get going! (ask for a minigrant, if necessary for obtaining reagents or other materials.)
Further information
- The lab layout is modular and flexible, with the tall bench useful in both orientations, depending on needs.
- Much equipment can be kept on shelves, and taken out to use when needed.
- All projects will have a box for their special equipment and stocks. Ask for a new one, if you need it!
- Always tidy things away after manipulations are complete, and if anything needs to stay out on a bench, or in incubators, remember to always leave signed and dated notes!
- Do you have questions?
Maybe you can't reach Rachel or Javier, or want to find out more before even trying to ask them??
There is a service in the DIYBio community for this Ask a Biosafety Professional! Use it! (actually in the midst of a double check to see if it still works -nov23) - Remember, being clueless is no excuse!! there are many ways to find information.
- The Standard Operating Procedures for appropriate use of the new space are being developed, and build upon what was previously decided during preparations to establish a P1 laboratory for Hackuarium members already back in 2015/6. (Some old equipment still has useful QR codes that lead to information in this wiki, too! Bravo, les poulpes!)
Here are some new SOPs for use of the small sterile hood and for use of the ultracentrifuge in the new space.
- Key code access will depend on responsibility and training of users of the space!
Watch this space for more information!
Translation help welcome! :)
Gallery
- first image: a moment during a micronuclei workshop (18may19)
- second image: Bioluminescence of Photobacterium phosphorum 8s exposure with SLR camera
- third image: Bioluminescence of Photobacterium phosphorum quick pic in 'inner sanctum' with iPhone SE
- fourth image: Bioluminescence of some marine plankton, the Dinoflagellates Pyrocystis fusiformis